mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data-Reference-Cited by-同舟云学术

mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data

Published:2017-04-07 Issue:16 Volume:33 Page:2598-2600
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Larralde Martin¹,Lawson Thomas N²,Weber Ralf J M²³,Moreno Pablo⁴,Haug Kenneth⁴,Rocca-Serra Philippe⁵,Viant Mark R²³,Steinbeck Christoph⁴⁶,Salek Reza M⁴

Affiliation:

1. École Normale Supérieure de Cachan, Cachan, France

2. School of Biosciences, University of Birmingham, Birmingham, UK

3. Phenome Centre Birmingham, University of Birmingham, Birmingham, UK

4. European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Cambridge, UK

5. University of Oxford e-Research Centre, Oxford, UK

6. Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University, Lessingstr. 8, Jena, Germany

Funder

Wellcome Trust

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/33/16/2598/25163487/btx169.pdf

Reference14 articles.

1. The galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update;Afgan;Nucleic Acids Res,2016

2. The metabolomics standards initiative (MSI);Fiehn;Metabolomics,2007

3. The risa R/Bioconductor package: integrative data analysis from experimental metadata and back again;González-Beltrán;BMC Bioinformatics,2014

4. Advances in the development of common interchange standards for proteomic data;Orchard;Proteomics,2004

5. MetaboLights: An Open-Access database repository for metabolomics data;Kale;Curr. Protoc. Bioinf,2016

Cited by 12 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage;Environmental Science & Technology;2024-07-10

2. Opportunities and challenges for sample preparation and enrichment in mass spectrometry for single‐cell metabolomics;ELECTROPHORESIS;2023-09-05

3. Data format standards in analytical chemistry;Pure and Applied Chemistry;2022-06-01

4. EnzymeML—a data exchange format for biocatalysis and enzymology;The FEBS Journal;2021-12-26

5. MSCAT: A Machine Learning Assisted Catalog of Metabolomics Software Tools;Metabolites;2021-10-02