SonicParanoid: fast, accurate and easy orthology inference-Reference-Cited by-同舟云学术

SonicParanoid: fast, accurate and easy orthology inference

Published:2018-07-19 Issue:1 Volume:35 Page:149-151
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Cosentino Salvatore¹,Iwasaki Wataru¹²³^ORCID

Affiliation:

1. Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan

2. Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan

3. Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan

Funder

Japanese Society for the Promotion of Scienc

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/1/149/27183029/bty631.pdf

Reference18 articles.

1. Automatic clustering of orthologs and inparalogs shared by multiple proteomes;Alexeyenko;Bioinformatics,2006

2. Standardized benchmarking in the quest for orthologs;Altenhoff;Nat. Methods,2016

3. Inferring orthology and paralogy;Altenhoff;Methods Mol. Biol,2012

4. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs;Altschul;Nucleic Acids Res,1997

5. Fast and sensitive protein alignment using DIAMOND;Buchfink;Nat. Methods,2015

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