CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories-Reference-Cited by-同舟云学术

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories

Published:2018-05-08 Issue:20 Volume:34 Page:3586-3588
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Jurcik Adam¹^ORCID,Bednar David²³,Byska Jan⁴,Marques Sergio M²³,Furmanova Katarina¹,Daniel Lukas²³,Kokkonen Piia²³,Brezovsky Jan²⁵⁶^ORCID,Strnad Ondrej¹,Stourac Jan¹²³,Pavelka Antonin¹²,Manak Martin⁷,Damborsky Jiri²³,Kozlikova Barbora¹

Affiliation:

1. Department of Computer Graphics and Design, Human Computer Interaction Laboratory, Faculty of Informatics, Masaryk University, Brno, Czech Republic

2. Loschmidt Laboratories, Department of Experimental Biology and Research Centre for Toxic Compounds in the Environment, Faculty of Science, Masaryk University, Brno, Czech Republic

3. International Centre for Clinical Research, St. Anne’s University Hospital, Brno, Czech Republic

4. Visualization Group, Department of Informatics, University of Bergen, Bergen, Norway

5. Department of Gene Expression, Institute of Molecular Biology and Biotechnology Faculty of Biology, Adam Mickiewicz University, Poznan, Poland

6. International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland

7. NTIS – New Technologies for the Information Society, Faculty of Applied Sciences, University of West Bohemia, Pilsen, Czech Republic

Funder

Czech Science Foundation

Ministry of Education

PhysioIllustration research

National Science Centre, Poland

Czech Republic

CERIT-Scientific Cloud

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/20/3586/26024353/bty386.pdf

Reference12 articles.

1. Engineering a de Novo Transport Tunnel;Brezovsky;ACS Catalysis,2016

2. MoleCollar and Tunnel Heat Map Visualization for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids;Byska;Computer Graphics Forum,2015

3. AnimoAminoMiner: exploration of Protein Tunnels and their Properties in Molecular Dynamics;Byska;IEEE Transactions on Visualization and Computer Graphics,2016

4. A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions;Dunbrack;Structure,2011

5. Gates of Enzymes;Gora;Chemical Reviews,2013

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