MechRNA: prediction of lncRNA mechanisms from RNA–RNA and RNA–protein interactions

Author:

Gawronski Alexander R1,Uhl Michael2,Zhang Yajia34,Lin Yen-Yi15ORCID,Niknafs Yashar S6,Ramnarine Varune R5,Malik Rohit6,Feng Felix67,Chinnaiyan Arul M3468,Collins Colin C5,Sahinalp S Cenk59,Backofen Rolf2

Affiliation:

1. Computing Science, Simon Fraser University, Burnaby BC, Canada

2. Centre for Biological Signalling Studies, University of Freiburg, Freiburg im Breisgau, Germany

3. Department of Pathology, University of Michigan, Ann Arbor, MI, USA

4. Department of Computational Medicine and Bioinformatics, Ann Arbor, MI, USA

5. Vancouver Prostate Centre, Vancouver, BC, Canada

6. Michigan Center for Translational Pathology, University of Michigan, Ann Arbor, MI, USA

7. Department of Radiation Oncology, University of Michigan, Ann Arbor, MI, USA

8. Howard Hughes Medical Institute, University of Michigan, Ann Arbor, MI, USA

9. Department of Computer Science, Indiana University, Bloomington, USA

Funder

Indiana University Grand Challenges Program

The Precision Health Initiative

NSERC Discovery Frontiers Program

Baden-Württemberg-Stiftung

German Research Foundation

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference65 articles.

1. 7SL RNA represses p53 translation by competing with HuR;Abdelmohsen;Nucleic Acids Res,2014

2. RNA-RNA interaction prediction and antisense RNA target search;Alkan;J. Comput. Biol,2006

3. RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets;Alkan;Nucleic Acids Res,2017

4. LEFTY2 controls migration of human endometrial cancer cells via focal adhesion kinase activity (FAK) and miRNA-200a;Alowayed;Cell. Physiol. Biochem,2016

5. Secondary structure prediction of interacting RNA molecules;Andronescu;J. Mol. Biol,2005

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