Publication-ready single nucleotide polymorphism visualization with snipit

Abstract

Abstract Summary Snipit is an analysis and visualization tool designed for summarizing single nucleotide polymorphisms in sequences in comparison to a reference sequence. This tool efficiently catalogues nucleotide and amino acid differences, enabling clear comparisons through customizable, publication-ready figures. With features such as configurable colour palettes, customizable record sorting, and the ability to output figures in multiple formats, snipit offers a user-friendly interface for researchers across diverse disciplines. In addition, snipit includes a specialized recombi-mode for illustrating recombination patterns, which can highlight otherwise often difficult-to-detect relationships between sequences. Availability and implementation Snipit is an open-source python-based tool that is hosted on GitHub under a GNU-GPL 3.0 licence (https://github.com/aineniamh/snipit). It can be installed from PyPi using pip. Source code and additional documentation can be found on the GitHub repository.