SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer

Author:

Beccuti Marco1,Cordero Francesca1,Arigoni Maddalena2,Panero Riccardo2,Amparore Elvio G1,Donatelli Susanna1,Calogero Raffaele A2

Affiliation:

1. Department of Computer Sciences, University of Torino, Turin, Italy

2. Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference9 articles.

1. Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis;Cordero;PLoS One,2012

2. STAR: ultrafast universal RNA-seq aligner;Dobin;Bioinformatics,2013

3. Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads;Jiang;BMC Bioinformatics,2014

4. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome;Li;BMC Bioinformatics,2011

5. Fast and accurate short read alignment with Burrows-Wheeler transform;Li;Bioinformatics,2009

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