Fast characterization of segmental duplications in genome assemblies-Reference-Cited by-同舟云学术

Fast characterization of segmental duplications in genome assemblies

Published:2018-09-01 Issue:17 Volume:34 Page:i706-i714
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Numanagić Ibrahim¹²,Gökkaya Alim S³,Zhang Lillian¹,Berger Bonnie¹²,Alkan Can³,Hach Faraz⁴⁵

Affiliation:

1. Computer Science and Artificial Intelligence Laboratory, Cambridge, MA, USA

2. Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA

3. Department of Computer Engineering, Bilkent University, Ankara, Turkey

4. Vancouver Prostate Centre, Vancouver, Canada

5. Department of Urologic Sciences, University of British Columbia, Vancouver, Canada

Funder

National Science and Engineering Research Council Discovery

EMBO Installation

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/17/i706/25702508/bty586.pdf

Reference53 articles.

1. A local chaining algorithm and its applications in comparative genomics;Abouelhoda,2003

2. Personalized copy number and segmental duplication maps using next-generation sequencing;Alkan;Nat. Genet.,2009

3. Genome structural variation discovery and genotyping;Alkan;Nat Rev. Genet.,2011

4. Limitations of next-generation genome sequence assembly;Alkan;Nat. Methods,2011

5. Basic local alignment search tool;Altschul;J. Mol. Biol.,1990

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