AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing-Reference-Cited by-同舟云学术

AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing

Published:2017-11-06 Issue:7 Volume:34 Page:1232-1234
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Shin Sunguk¹,Lee Hanna¹,Son Hyeonju¹²,Paik Soonmyung¹,Kim Sangwoo¹^ORCID

Affiliation:

1. Severance Biomedical Science Institute, Yonsei University College of Medicine, Seoul, South Korea

2. Brain Korea 21 PLUS Project for Medical Science, Yonsei University College of Medicine, Seoul, South Korea

Funder

National Research Foundation of Korea

NRF

Korea Health Industry Development Institute

Yonsei University College of Medicine

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/7/1232/25119652/btx719.pdf

Reference8 articles.

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2. Systematic comparison of variant calling pipelines using gold standard personal exome variants;Hwang,2015

3. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing;Koboldt;Genome Res,2012

4. Performance comparison of illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling;Salipante;Appl. Environ. Microbiol,2014

5. Characterization of sequence-specific errors in various next-generation sequencing systems;Shin;Mol. Biosyst,2016

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