GenomeScope: fast reference-free genome profiling from short reads-Reference-Cited by-同舟云学术

GenomeScope: fast reference-free genome profiling from short reads

Published:2017-03-24 Issue:14 Volume:33 Page:2202-2204
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Vurture Gregory W¹,Sedlazeck Fritz J²,Nattestad Maria¹,Underwood Charles J¹,Fang Han¹³,Gurtowski James¹,Schatz Michael C¹²

Affiliation:

1. Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

2. Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA

3. Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, USA

Funder

National Science Foundation

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/33/14/2202/25157257/btx153.pdf

Reference17 articles.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing;Bankevich;J. Comput. Biol,2012

2. Nonlinear Regression Analysis and Its Applications

3. Informed and automated k-mer size selection for genome assembly;Chikhi;Bioinformatics,2014

4. High-quality draft assemblies of mammalian genomes from massively parallel sequence data;Gnerre;Proc. Natl. Acad. Sci. U. S. A,2011

5. Coming of age: ten years of next-generation sequencing technologies;Goodwin;Nat. Rev. Genet,2016

Cited by 1277 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Comparative genomics reveals the molecular mechanisms of two drought-tolerant forages adapted to extreme environments in the northwest of China;Industrial Crops and Products;2024-12

2. A survey of k-mer methods and applications in bioinformatics;Computational and Structural Biotechnology Journal;2024-12

3. Positive selection in cilia-related genes may facilitate deep-sea adaptation of Thermocollonia jamsteci;Science of The Total Environment;2024-11

4. Draft genome datasets for Cimex hemipterus from 454 Roche shotgun sequencings and Illumina HiSeq;Data in Brief;2024-10

5. Genome-wide association studies using chromosome-scale genomes of male and female lines redefines two sex-linked loci in linkage disequilibrium in Ficus carica L.;Scientia Horticulturae;2024-10