ThreaDNA: predicting DNA mechanics’ contribution to sequence selectivity of proteins along whole genomes

Author:

Cevost Jasmin1,Vaillant Cédric2,Meyer Sam1

Affiliation:

1. Microbiologie, Adaptation et Pathogénie, UMR5240, INSA Lyon, Université de Lyon, Villeurbanne

2. Laboratoire de Physique, UMR5672, ENS Lyon, CNRS, Université de Lyon, Lyon, France

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference39 articles.

1. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update;Afgan;Nucleic Acids Res,2016

2. A theoretical model for the prediction of sequence-dependent nucleosome thermodynamic stability;Anselmi;Biophys. J,2000

3. DNA nanomechanics in the nucleosome;Becker;Structure,2009

4. Indirect readout: detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials;Becker;Nucleic Acids Res,2006

5. Thermodynamics of intragenic nucleosome ordering;Chevereau;Phys. Rev. Lett,2009

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