Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points-Reference-Cited by-同舟云学术

Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points

Published:2018-07-10 Issue:2 Volume:35 Page:211-218
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Leimeister Chris-André¹,Dencker Thomas¹,Morgenstern Burkhard¹²

Affiliation:

1. Department of Bioinformatics, Institute of Microbiology and Genetics

2. Center for Computational Sciences, University of Goettingen, Goettingen, Germany

Funder

VW Foundation

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/2/211/27496942/bty592.pdf

Reference58 articles.

1. Basic local alignment search tool;Altschul;J. Mol. Biol,1990

2. Mugsy: fast multiple alignment of closely related whole genomes;Angiuoli;Bioinformatics,2011

3. The many faces of sequence alignment;Batzoglou;Brief. Bioinformatics,2005

4. Aligning multiple genomic sequences with the threaded blockset aligner;Blanchette;Genome Res,2004

5. Fast statistical alignment;Bradley;PLoS Comput. Biol,2009

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