Strand-seq enables reliable separation of long reads by chromosome via expectation maximization-Reference-Cited by-同舟云学术

Strand-seq enables reliable separation of long reads by chromosome via expectation maximization

Published:2018-06-27 Issue:13 Volume:34 Page:i115-i123
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Ghareghani Maryam¹²³,Porubskỳ David¹²,Sanders Ashley D⁴,Meiers Sascha⁴,Eichler Evan E⁵⁶,Korbel Jan O⁴,Marschall Tobias¹²

Affiliation:

1. Center for Bioinformatics, Saarland University, Saarland Informatics Campus E2.1, Saarbrücken, 66123, Germany

2. Max Planck Institute for Informatics, Saarland Informatics Campus E1.4, Saarbrücken, Germany

3. Graduate School of Computer Science, Saarland University, Saarland Informatics Campus E1.3, Saarbrücken, Germany

4. European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany

5. Department of Genome Sciences, University of Washington, Seattle, WA, USA

6. Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA

Funder

EEE

JOK

NIH

Howard Hughes Medical Institute

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/13/i115/25098120/bty290.pdf

Reference23 articles.

1. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions;Burton;Nat. Biotechnol,2013

2. Phased diploid genome assembly with single-molecule real-time sequencing;Chin;Nat. Methods,2016

3. Genome-wide mapping of sister chromatid exchange events in single yeast cells using strand-seq;Claussin;Elife,2017

4. Maximum likelihood from incomplete data via the EM algorithm;Dempster;J. R. Stat. Soc. Ser. B (Methodol.),1977

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