Database indexing for production MegaBLAST searches-Reference-Cited by-同舟云学术

Database indexing for production MegaBLAST searches

Published:2008-06-21 Issue:16 Volume:24 Page:1757-1764
ISSN:1460-2059
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Morgulis Aleksandr,Coulouris George,Raytselis Yan,Madden Thomas L.,Agarwala Richa,Schäffer Alejandro A.

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/24/16/1757/17101681/btn322.pdf

Reference16 articles.

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3. Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST;Gertz;BMC Biol,2006

4. SST: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size;Giladi;Bioinformatics,2002

5. Survey on index based homology search algorithms;Jiang;J. Supercomput,2007

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