VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening-Reference-Cited by-同舟云学术

VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening

Published:2017-10-23 Issue:5 Volume:34 Page:755-759
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Schäffer Alejandro A¹,Nawrocki Eric P¹,Choi Yoon¹,Kitts Paul A¹,Karsch-Mizrachi Ilene¹,McVeigh Richard¹

Affiliation:

1. Department of Health and Human Services, National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD, USA

Funder

National Institutes of Health

NLM

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/5/755/25417030/btx669.pdf

Reference22 articles.

1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs;Altschul;Nucleic Acids Res,1997

2. Contamination of DNA database sequence entries with Escherichia coli insertion sequences;Binns;Nucleic Acids Res,1993

3. BLAST+: architecture and applications;Camacho;BMC Bioinform,2009

4. Identifying adaptor contamination when mining DNA sequence data;Coker;Biotechniques,2004

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