Methods for automatic reference trees and multilevel phylogenetic placement-Reference-Cited by-同舟云学术

Methods for automatic reference trees and multilevel phylogenetic placement

Published:2018-08-31 Issue:7 Volume:35 Page:1151-1158
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Czech Lucas¹^ORCID,Barbera Pierre¹^ORCID,Stamatakis Alexandros¹²

Affiliation:

1. Scientific Computing Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany

2. Institute for Theoretical Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany

Funder

Klaus Tschira Stiftung gGmbH in Heidelberg, Germany

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/7/1151/28312904/bty767.pdf

Reference42 articles.

1. The UNITE database for molecular identification of fungi–recent updates and future perspectives;Abarenkov;New Phytol,2010

2. SILVA, RDP, Greengenes, NCBI and OTT—how do these taxonomies compare?;Balvočiūtė;BMC Genom,2017

3. EPA-ng: massively parallel evolutionary placement of genetic sequences;Barbera;bioRxiv,2018

4. Performance, accuracy, and web server for evolutionary placement of short sequence reads under maximum likelihood;Berger;Syst. Biol,2011

Cited by 32 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Unexpected functional diversity of stream biofilms within and across proglacial floodplains despite close spatial proximity;Limnology and Oceanography;2023-08-18

2. Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark;Zoological Journal of the Linnean Society;2023-08-14

3. Genetic determination of regional connectivity in modelling the spread of COVID-19 outbreak for more efficient mitigation strategies;Scientific Reports;2023-05-25

4. SCAMPP: Scaling Alignment-Based Phylogenetic Placement to Large Trees;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2023-03-01

5. African mitochondrial haplogroup L7: a 100,000-year-old maternal human lineage discovered through reassessment and new sequencing;Scientific Reports;2022-06-24