Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures

Author:

Sonabend Raphael123ORCID,Bender Andreas4ORCID,Vollmer Sebastian156

Affiliation:

1. Department of Computer Science, Technische Universität Kaiserslautern , 67663 Kaiserslautern, Germany

2. Engineering Department, University of Cambridge , CB2 1PZ Cambridge, UK

3. MRC Centre for Global Infectious Disease Analysis, Jameel Institute, Imperial College London, School of Public Health , W2 1PG London, UK

4. Department of Statistics, LMU Munich , 80539 Bavaria, Germany

5. Data Science and its Application, Deutsches Forschungszentrum für Künstliche Intelligenz (DFKI) , 67663 Kaiserslautern, Germany

6. Mathematics Institute, University of Warwick , CV4 7AL Coventry, UK

Abstract

Abstract Motivation In this article, we consider how to evaluate survival distribution predictions with measures of discrimination. This is non-trivial as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution prediction. We survey methods proposed in literature and software and consider their respective advantages and disadvantages. Results Whilst distributions are frequently evaluated by discrimination measures, we find that the method for doing so is rarely described in the literature and often leads to unfair comparisons or ‘C-hacking’. We demonstrate by example how simple it can be to manipulate results and use this to argue for better reporting guidelines and transparency in the literature. We recommend that machine learning survival analysis software implements clear transformations between distribution and risk predictions in order to allow more transparent and accessible model evaluation. Availability and implementation The code used in the final experiment is available at https://github.com/RaphaelS1/distribution_discrimination.

Funder

German Federal Ministry of Education and Research

BMBF

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference50 articles.

1. A comparison of time to event analysis methods, using weight status and breast cancer as a case study;Aivaliotis;Sci. Rep,2021

2. A time-dependent discrimination index for survival data;Antolini;Stat. Med,2005

3. Mlr: machine learning in R;Bischl;J. Mach. Learn. Res,2016

Cited by 7 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3