Identifying antimicrobial peptides using word embedding with deep recurrent neural networks-Reference-Cited by-同舟云学术

Identifying antimicrobial peptides using word embedding with deep recurrent neural networks

Published:2018-11-10 Issue:12 Volume:35 Page:2009-2016
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Hamid Md-Nafiz¹²,Friedberg Iddo¹²^ORCID

Affiliation:

1. Interdepartmental program in Bioinformatics and Computational Biology

2. Department of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA

Funder

Office of the Director of National Intelligence (ODNI)

Intelligence Advanced Research Projects Activity (IARPA)

Army Research Office

ARO

National Science Foundation

NSF

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/12/2009/28839757/bty937.pdf

Reference45 articles.

1. Gapped blast and psi-blast: a new generation of protein database search programs;Altschul;Nucleic Acids Res,1997

2. Uniprot: the universal protein knowledgebase;Apweiler;Nucleic Acids Res,2004

3. Continuous distributed representation of biological sequences for deep proteomics and genomics;Asgari;PLoS One,2015

4. Genbank;Benson;Nucleic Acids Res,2014

5. UniProtKB/Swiss-Prot, the manually annotated section of the UniProt KnowledgeBase: how to use the entry view;Boutet;Plant Bioinformatics. Methods in Molecular Biology,2016

Cited by 86 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. An escape from ESKAPE pathogens: A comprehensive review on current and emerging therapeutics against antibiotic resistance;International Journal of Biological Macromolecules;2024-11

2. Deep learning neural network development for the classification of bacteriocin sequences produced by lactic acid bacteria;F1000Research;2024-08-30

3. The potential of bacteriocins and bacteriophages to control bacterial disease of crops with a focus on Xanthomonas spp.*;Journal of the Royal Society of New Zealand;2024-05-23

4. MulTFBS: A Spatial-Temporal Network with Multichannels for Predicting Transcription Factor Binding Sites;Journal of Chemical Information and Modeling;2024-05-11

5. Improvements in viral gene annotation using large language models and soft alignments;BMC Bioinformatics;2024-04-25