NanoShaper–VMD interface: computing and visualizing surfaces, pockets and channels in molecular systems-Reference-Cited by-同舟云学术

NanoShaper–VMD interface: computing and visualizing surfaces, pockets and channels in molecular systems

Published:2018-08-31 Issue:7 Volume:35 Page:1241-1243
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Decherchi Sergio¹²,Spitaleri Andrea¹,Stone John³,Rocchia Walter¹^ORCID

Affiliation:

1. CONCEPT Lab, Istituto Italiano di Tecnologia, Genoa, Italy

2. BiKi Technologies s.r.l., Genova, Italy

3. Beckman Institute, University of Illinois at Urbana-Champaign, Urbana, IL, USA

Funder

National Institutes of Health

NIGMS

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/7/1241/28277855/bty761.pdf

Reference12 articles.

1. A general and robust ray-casting-based algorithm for triangulating surfaces at the nanoscale;Decherchi;PLoS One,2013

2. Between algorithm and model: different molecular surface definitions for the Poisson-Boltzmann based electrostatic characterization of biomolecules in solution;Decherchi;Commun. Comput. Phys,2013

3. The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology;Fogolari;J. Mol. Recognit,2002

4. Molecular dynamics simulations of the complete satellite tobacco mosaic virus;Freddolino;Structure,2006

5. VMD—visual molecular dynamics;Humphrey;J. Mol. Graph,1996

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