GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC-Reference-Cited by-同舟云学术

GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC

Published:2018-03-02 Issue:14 Volume:34 Page:2515-2517
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Li Ruidong¹²,Qu Han¹,Wang Shibo¹,Wei Julong¹³,Zhang Le¹²,Ma Renyuan¹⁴,Lu Jianming¹⁵,Zhu Jianguo⁶,Zhong Wei-De⁵,Jia Zhenyu¹²

Affiliation:

1. Department of Botany and Plant Sciences

2. Genetics, Genomics, and Bioinformatics Program, University of California, Riverside, CA, USA

3. College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, Jiangsu, China

4. Department of Mathematics, Bowdoin College, Brunswick, USA

5. Department of Urology, Guangdong Key Laboratory of Clinical Molecular Medicine and Diagnostics, Guangzhou First People's Hospital, The Second Affiliated Hospital of South China University of Technology, Guangzhou, China

6. Department of Urology, Guizhou Provincial People's Hospital, Guizhou, China

Funder

Faculty Start-up Fund

UC Aca-demic Senate Regents Faculty Fellowship

National Key Basic Research Program of China

Fundamental Research Funds for the Central Universities

Projects of Guizhou Province

National Natural Science Foundation of China

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/14/2515/25138274/bty124.pdf

Reference15 articles.

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3. spongeScan: a web for detecting microRNA binding elements in lncRNA sequences;Furió-Tarí;Nucleic Acids Res,2016

4. miRcode: a map of putative microRNA target sites in the long non-coding transcriptome;Jeggari;Bioinformatics,2012

5. HMGA2 functions as a competing endogenous RNA to promote lung cancer progression;Kumar;Nature,2014

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