rMAT - an R/Bioconductor package for analyzing ChIP-chip experiments

Author:

Droit Arnaud1,Cheung Charles1,Gottardo Raphael1

Affiliation:

1. Institut de recherches cliniques de Montreal, 110, avenue des Pins Ouest, Montreal, QC H2W 1R7, Canada and 2 Department of Biostatistics, University of Washington, Seattle, WA 98195–7232, USA

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference6 articles.

1. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1;Carroll;Cell,2005

2. Bioconductor: open software development for computational biology and Bioinformatics;Gentleman;Genome Biol.,2004

3. Model-based analysis of tiling-arrays for chip-chip;Johnson;Proc. Natl Acad. Sci. USA,2006

4. TileProbe: modeling tiling array probe effects using publicly available data;Judy;Bioinformatics,2009

5. Genome-wide mapping of protein-DNA interactions by chromatin immunoprecipitation and DNA microarray hybridization;Lieb;Methods Mol. Biol.,2003

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