A dual-rule encoding DNA storage system using chaotic mapping to control GC content

Author:

Zhang Xuncai1ORCID,Qi Baonan1ORCID,Niu Ying2

Affiliation:

1. College of Electrical Information Engineering, Zhengzhou University of Light Industry , Zhengzhou 450000, Henan, China

2. College of Building Environment Engineering, Zhengzhou University of Light Industry , Zhengzhou 450000, Henan, China

Abstract

Abstract Motivation DNA as a novel storage medium is considered an effective solution to the world’s growing demand for information due to its high density and long-lasting reliability. However, early coding schemes ignored the biologically constrained nature of DNA sequences in pursuit of high density, leading to DNA synthesis and sequencing difficulties. This article proposes a novel DNA storage coding scheme. The system encodes half of the binary data using each of the two GC-content complementary encoding rules to obtain a DNA sequence. Results After simulating the encoding of representative document and image file formats, a DNA sequence strictly conforming to biological constraints was obtained, reaching a coding potential of 1.66 bit/nt. In the decoding process, a mechanism to prevent error propagation was introduced. The simulation results demonstrate that by adding Reed-Solomon code, 90% of the data can still be recovered after introducing a 2% error, proving that the proposed DNA storage scheme has high robustness and reliability. Availability and implementation: The source code for the codec scheme of this paper is available at https://github.com/Mooreniah/DNA-dual-rule-rotary-encoding-storage-system-DRRC.

Funder

National Natural Science Foundation of China

Publisher

Oxford University Press (OUP)

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