SCOP: a novel scaffolding algorithm based on contig classification and optimization-Reference-Cited by-同舟云学术

SCOP: a novel scaffolding algorithm based on contig classification and optimization

Published:2018-09-03 Issue:7 Volume:35 Page:1142-1150
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Li Min¹,Tang Li¹,Wu Fang-Xiang¹²,Pan Yi¹³,Wang Jianxin¹

Affiliation:

1. Department of computer science, School of Information Science and Engineering, Central South University, Changsha, China

2. Division of Biomedical Engineering, University of Saskatchewan, Saskatoon SK, Canada

3. Department of Computer Science, Georgia State University, Atlanta, GA, USA

Funder

National Natural Science Foundation of China

111 Project

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/35/7/1142/28277786/bty773.pdf

Reference41 articles.

1. Pe-assembler: de novo assembler using short paired-end reads;Ariyaratne;Bioinformatics,2011

2. Scaffoldscaffolder: solving contig orientation via bidirected to directed graph reduction;Bodily;Bioinformatics,2016

3. Scaffolding pre-assembled contigs using sspace;Boetzer;Bioinformatics,2011

4. Telescoper: de novo assembly of highly repetitive regions;Bresler;Bioinformatics,2012

5. Sopra: scaffolding algorithm for paired reads via statistical optimization;Dayarian;Bmc Bioinformatics,2010

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