selscan 2.0: scanning for sweeps in unphased data-Reference-Cited by-同舟云学术

selscan 2.0: scanning for sweeps in unphased data

Published:2024-01-01 Issue:1 Volume:40 Page:
ISSN:1367-4811
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Szpiech Zachary A¹²^ORCID

Affiliation:

1. Department of Biology, Penn State University , University Park, PA 16802, United States

2. Institute for Computational and Data Sciences, Penn State University , University Park, PA 16802, United States

Abstract

Abstract Summary Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data. Availability and implementation Source code and binaries are freely available at https://github.com/szpiech/selscan, implemented in C/C++, and supported on Linux, Windows, and MacOS.

Funder

National Institutes of Health

Pennsylvania State University’s Department of Biology

Publisher

Oxford University Press (OUP)

Link

https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btae006/55117271/btae006.pdf

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