Single cell network analysis with a mixture of Nested Effects Models-Reference-Cited by-同舟云学术

Single cell network analysis with a mixture of Nested Effects Models

Published:2018-09-01 Issue:17 Volume:34 Page:i964-i971
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Pirkl Martin¹²,Beerenwinkel Niko¹²

Affiliation:

1. Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland

2. SIB Swiss Institute of Bioinformatics, Basel, Switzerland

Funder

Swiss Initiative in Systems Biology

TargetInfectX – Multi-Pronged Perturbation of Pathogen Infection in Human Cells

Swiss National Science Foundation

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/17/i964/25702572/bty602.pdf

Reference32 articles.

1. Modeling the temporal interplay of molecular signaling and gene expression by using dynamic nested effects models;Anchang;Proc. Natl. Acad. Sci. USA,2009

2. Pooled crispr screening with single-cell transcriptome readout;Datlinger;Nat. Methods,2017

3. Maximum likelihood from incomplete data via the EM algorithm;Dempster;J. R. Stat. Soc. Ser. B (Methodological),1977

4. Perturb-seq: dissecting molecular circuits with scalable single-cell rna profiling of pooled genetic screens;Dixit;Cell,2016

5. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository;Edgar;Nucleic Acids Res.,2002

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