APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks-Reference-Cited by-同舟云学术

APPAGATO: an APproximate PArallel and stochastic GrAph querying TOol for biological networks

Published:2016-04-29 Issue:14 Volume:32 Page:2159-2166
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Bonnici Vincenzo¹,Busato Federico¹,Micale Giovanni²,Bombieri Nicola¹,Pulvirenti Alfredo³,Giugno Rosalba¹³

Affiliation:

1. Department of Computer Science, University of Verona, Strada Le Grazie, Verona

2. Department of Math and Computer Science, University of Catania, Viale a. Doria, Catania

3. Department of Clinical and Experimental Medicine, University of Catania, via Palermo, Catania

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/32/14/2159/26346560/btw223.pdf

Reference43 articles.

1. Network biology: understanding the cell’s functional organization;Barabasi;Nat. Rev. Genet,2004

2. Querying graphs in protein-protein interactions networks using feedback vertex set;Blin;IEEE/ACM Trans. Comput. Biol. Bioinform,2010

3. On the variable ordering in subgraph isomorphism algorithms;Bonnici;IEEE/ACM Trans. Comput. Biol. Bioinform,2016

4. A subgraph isomorphism algorithm and its application to biochemical data;Bonnici;BMC Bioinformatics,2013

Cited by 9 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. PathEmb: Random Walk Based Document Embedding for Global Pathway Similarity Search;IEEE Journal of Biomedical and Health Informatics;2019-05

2. Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics;Interdisciplinary Sciences: Computational Life Sciences;2019-02-21

3. Parallel Searching on Biological Networks;2019 27th Euromicro International Conference on Parallel, Distributed and Network-Based Processing (PDP);2019-02

4. ToBio: Global Pathway Similarity Search Based on Topological and Biological Features;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2019-01-01

5. Simple Pattern-only Heuristics Lead to Fast Subgraph Matching Strategies on Very Large Networks;Practical Applications of Computational Biology and Bioinformatics, 12th International Conference;2018-08-17