QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data-Reference-Cited by-同舟云学术

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data

Published:2017-06-19 Issue:1 Volume:34 Page:163-170
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Skums Pavel¹²,Zelikovsky Alex¹,Singh Rahul³,Gussler Walker²,Dimitrova Zoya²,Knyazev Sergey¹,Mandric Igor¹,Ramachandran Sumathi²,Campo David²,Jha Deeptanshu³,Bunimovich Leonid⁴,Costenbader Elizabeth⁵,Sexton Connie²⁶,O’Connor Siobhan²⁷,Xia Guo-Liang²,Khudyakov Yury²

Affiliation:

1. Department of Computer Science, Georgia State University, Atlanta, GA, USA

2. Centers for Disease Control and Prevention, Division of Viral Hepatitis, Atlanta, GA, USA

3. Department of Computer Science, San Francisco State University, San Francisco, CA, USA

4. School of Mathematics, Georgia Institute of Technology, Atlanta, GA, USA

5. FHI 360, Durham, NC, USA

6. Division of Global HIV and TB, Centers for Disease Control and Prevention, Atlanta, GA, USA

7. Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention, Atlanta, GA, USA

Funder

NSF

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/1/163/25113518/btx402.pdf

Reference39 articles.

1. Modelling the spread of infectious salmon anaemia among salmon farms based on seaway distances between farms and genetic relationships between infectious salmon anaemia virus isolates;Aldrin;J. Roy. Soc. Interf,2011

2. A comparison of extrinsic clustering evaluation metrics based on formal constraints;Amigó;Inf. Retrieval,2009

3. Transmission of hepatitis c virus associated with surgical procedures-New Jersey 2010 and Wisconsin 2011;Apostolou;Morb. Mortal. Wkly. Rep,2015

4. Median-joining networks for inferring intraspecific phylogenies;Bandelt;Mol. Biol. Evol,1999

5. A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies;Bartlett;J. Viral Hepat,2016

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