Cyclone: open-source package for simulation and analysis of finite dynamical systems

Author:

Dimitrova Elena S1ORCID,Knapp Adam C2ORCID,Stigler Brandilyn3ORCID,Stillman Michael E4ORCID

Affiliation:

1. Mathematics Department, California Polytechnic State University , San Luis Obispo, CA 93407, United States

2. Department of MD-Pulmonary Laboratory for Systems Medicine, University of Florida , Gainesville, FL 32610, United States

3. Department of Mathematics, P.O. Box 750156, Southern Methodist University , Dallas, TX 75275, United States

4. Department of Mathematics, Cornell University , Ithaca, NY 14853, United States

Abstract

Abstract Motivation While there are software packages that analyze Boolean, ternary, or other multi-state models, none compute the complete state space of function-based models over any finite set. Results: We propose Cyclone, a simple light-weight software package which simulates the complete state space for a finite dynamical system over any finite set. Availability and implementation Source code is freely available at https://github.com/discretedynamics/cyclone under the Apache-2.0 license.

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

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