GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit-Reference-Cited by-同舟云学术

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

Published:2013-02-13 Issue:7 Volume:29 Page:845-854
ISSN:1460-2059
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Pronk Sander,Páll Szilárd,Schulz Roland,Larsson Per,Bjelkmar Pär,Apostolov Rossen,Shirts Michael R.,Smith Jeremy C.,Kasson Peter M.,van der Spoel David,Hess Berk,Lindahl Erik

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/29/7/845/17343875/btt055.pdf

Reference51 articles.

1. Phase transition for a hard sphere system;Alder;J. Chem. Phys.,1957

2. Efficient estimation of free energy differences from Monte Carlo data;Bennett;J. Comp. Phys.,1976

3. Report of CECAM workshop: models for protein dynamics;Berendsen,1976

4. Scalable algorithms for molecular dynamics simulations on commodity clusters;Bowers,2006

5. Atomistic folding simulations of the five helix bundle protein 6-85;Bowman;J. Am. Chem. Soc.,2011

Cited by 6166 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. The study on characterization of interaction between casticin and model proteins using spectroscopic and computational methodologies;Journal of Molecular Structure;2025-02

2. Cubosome lipid nanocarriers for delivery of ultra-short antimicrobial peptides;Journal of Colloid and Interface Science;2025-01

3. Synthesis, crystal structure, quantum computational, biological study, molecular docking and molecular dynamic simulations investigations on 2,2′-((1,4-phenylenebis(methylene)) bis(sulfanediyl))dianiline;Journal of Molecular Structure;2025-01

4. A comparative study on the solubility of CH3SH and H2S in imidazolium-based ionic liquids: A connectionist approach between free volume and thermodynamics;Separation and Purification Technology;2025-01

5. Benzohydroxamate and nitrobenzohydroxamate affect membrane order: Correlations between spectroscopic and molecular dynamics to approach tuberculosis;Biochimica et Biophysica Acta (BBA) - Biomembranes;2024-12