MrBait: universal identification and design of targeted-enrichment capture probes-Reference-Cited by-同舟云学术

MrBait: universal identification and design of targeted-enrichment capture probes

Published:2018-06-29 Issue:24 Volume:34 Page:4293-4296
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Chafin Tyler K¹^ORCID,Douglas Marlis R¹,Douglas Michael E¹

Affiliation:

1. Department of Biological Sciences, University of Arkansas, Fayetteville, AR, USA

Funder

XSEDE Startup Allocation

MED

Research Allocation

MRD

University of Arkansas Endowments

Bruker Professorship in Life Sciences to MRD

21st Century Chair in Global Climate Change Biology

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/24/4293/27088731/bty548.pdf

Reference21 articles.

1. RAD capture (Rapture): flexible and efficient sequence-based genotyping;Ali;Genetics,2016

2. Basic local alignment search tool;Altschul;J. Mol. Biol,1990

3. HiCapTools: a software suite for probe design and proximity detection for targeted chromosome conformation capture applications;Anil;Bioinformatics,2018

4. Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales;Bi;BMC Genomics,2012

5. The impact of GC bias on phylogenetic accuracy using targeted enrichment phylogenomic data;Bossert;Mol. Phylogenet. Evol,2017

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