FermiKit: assembly-based variant calling for Illumina resequencing data-Reference-Cited by-同舟云学术

FermiKit: assembly-based variant calling for Illumina resequencing data

Published:2015-07-27 Issue: Volume: Page:btv440
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:Bioinformatics

Author:

Li Heng

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/31/22/3694/5031002/btv440.pdf

Reference13 articles.

1. SAMBLASTER: fast duplicate marking and structural variant read extraction

2. Haplotype-based variant detection from short-read sequencing;Garrison;arXiv:1207.3907,2012

3. LUMPY: a probabilistic framework for structural variant discovery

4. Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly

5. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM;Li;arXiv:1303.3997,2013

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