survex: an R package for explaining machine learning survival models

Author:

Spytek Mikołaj1,Krzyziński Mateusz1,Langbein Sophie Hanna23,Baniecki Hubert14,Wright Marvin N235,Biecek Przemysław14ORCID

Affiliation:

1. MI2.AI, Faculty of Mathematics and Information Science, Warsaw University of Technology , Warsaw, Poland

2. Leibniz Institute for Prevention Research and Epidemiology—BIPS , Bremen, Germany

3. Faculty of Mathematics and Computer Science, University of Bremen , Bremen, Germany

4. MI2.AI, Faculty of Mathematics, Informatics and Mechanics, University of Warsaw , Warsaw, Poland

5. Section of Biostatistics, Department of Public Health, University of Copenhagen , Copenhagen, Denmark

Abstract

Abstract Summary Due to their flexibility and superior performance, machine learning models frequently complement and outperform traditional statistical survival models. However, their widespread adoption is hindered by a lack of user-friendly tools to explain their internal operations and prediction rationales. To tackle this issue, we introduce the survex R package, which provides a cohesive framework for explaining any survival model by applying explainable artificial intelligence techniques. The capabilities of the proposed software encompass understanding and diagnosing survival models, which can lead to their improvement. By revealing insights into the decision-making process, such as variable effects and importances, survex enables the assessment of model reliability and the detection of biases. Thus, transparency and responsibility may be promoted in sensitive areas, such as biomedical research and healthcare applications. Availability and implementation survex is available under the GPL3 public license at https://github.com/modeloriented/survex and on CRAN with documentation available at https://modeloriented.github.io/survex.

Funder

National Science Centre

Polish National Centre for Research and Development

German Research Foundation

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference38 articles.

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