Viral quasispecies reconstruction via tensor factorization with successive read removal-Reference-Cited by-同舟云学术

Viral quasispecies reconstruction via tensor factorization with successive read removal

Published:2018-06-27 Issue:13 Volume:34 Page:i23-i31
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Ahn Soyeon¹,Ke Ziqi¹,Vikalo Haris¹

Affiliation:

1. Department of Electrical and Computer Engineering, The University of Texas at Austin, Austin, TX, USA

Funder

National Science Foundation

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/13/i23/25098171/bty291.pdf

Reference29 articles.

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2. De novo assembly of viral quasispecies using overlap graphs;Baaijens;Genome Res,2017

3. Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data;Beerenwinkel;Front. Microbiol,2012

4. Structured low-rank matrix factorization for haplotype assembly;Cai;IEEE J. Selected Topics Signal Process,2016

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