BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters

Author:

Chu Justin,Sadeghi Sara,Raymond Anthony,Jackman Shaun D.,Nip Ka Ming,Mar Richard,Mohamadi Hamid,Butterfield Yaron S.,Robertson A. Gordon,Birol Inanç

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference9 articles.

1. Space/time trade-offs in hash coding with allowable errors;Bloom;Commun ACM,1970

2. Network applications of bloom filters: a survey;Broder;Int. Math.,2004

3. Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma;Castellarin;Genome Res.,2012

4. Lightweight data indexing and compression in external memory;Ferragina;Algorithmica,2012

5. PathSeq: software to identify or discover microbes by deep sequencing of human tissue;Kostic;Nat. Biotechnol.,2011

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