TeraPCA: a fast and scalable software package to study genetic variation in tera-scale genotypes
Author:
Affiliation:
1. Computer Science Department, Purdue University, West Lafayette, IN, USA
2. IBM Research, Thomas J. Watson Research Center, Yorktown Heights, NY, USA
3. Department of Biological Sciences, Purdue University, West Lafayette, IN, USA
Abstract
Funder
National Science Foundation
Publisher
Oxford University Press (OUP)
Subject
Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability
Link
http://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btz157/28492008/btz157.pdf
Reference31 articles.
1. Fast principal component analysis of large-scale genome-wide data;Abraham;PLoS One,2014
2. FlashPCA2: principal component analysis of Biobank-scale genotype datasets;Abraham;Bioinformatics,2017
3. Fast model-based estimation of ancestry in unrelated individuals;Alexander;Genome Res,2009
4. LAPACK Users' Guide
5. Dissecting Population Substructure in India via Correlation Optimization of Genetics and Geodemographics;Bose;bioRxiv,2017
Cited by 30 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. MaSk-LMM: A Matrix Sketching Framework for Linear Mixed Models in Association Studies;Lecture Notes in Computer Science;2024
2. MaSk-LMM: A Matrix Sketching Framework for Linear Mixed Models in Association Studies;2023-11-13
3. Structure-informed clustering for population stratification in association studies;BMC Bioinformatics;2023-10-31
4. PheWAS and cross-disorder analysis reveal genetic architecture, pleiotropic loci and phenotypic correlations across 11 autoimmune disorders;Frontiers in Immunology;2023-09-21
5. Fast and accurate out-of-core PCA framework for large scale biobank data;Genome Research;2023-08-24
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3