MomentClosure.jl: automated moment closure approximations in Julia-Reference-Cited by-同舟云学术

MomentClosure.jl: automated moment closure approximations in Julia

Published:2021-06-25 Issue:1 Volume:38 Page:289-290
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Sukys Augustinas¹²,Grima Ramon¹^ORCID

Affiliation:

1. SynthSys, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JD, UK

2. The Alan Turing Institute, London NW1 2DB, UK

Abstract

Abstract Summary MomentClosure.jl is a Julia package providing automated derivation of the time-evolution equations of the moments of molecule numbers for virtually any chemical reaction network using a wide range of moment closure approximations. It extends the capabilities of modelling stochastic biochemical systems in Julia and can be particularly useful when exact analytic solutions of the chemical master equation are unavailable and when Monte Carlo simulations are computationally expensive. Availability and implementation MomentClosure.jl is freely accessible under the MIT licence. Source code and documentation are available at https://github.com/augustinas1/MomentClosure.jl.

Funder

Alan Turing Institute Doctoral Studentship [EPSRC

Leverhulme Trust

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btab469/39309771/btab469.pdf

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