Discriminative modelling of context-specific amino acid substitution probabilities

Author:

Angermüller Christof,Biegert Andreas,Söding Johannes

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Reference25 articles.

1. Parameter adaptation in stochastic optimization;Almeida,1998

2. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs;Altschul;Nucleic Acids Res.,1997

3. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins;Baussand;Proteins,2007

4. Sequence context-specific profiles for homology searching;Biegert;Proc. Natl Acad. Sci. USA,2009

5. Stochastic learning;Bottou;Lect. Notes Comput. Sci.,2004

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