Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping-Reference-Cited by-同舟云学术

Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping

Published:2018-04-19 Issue:18 Volume:34 Page:3118-3125
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Raimondi Daniele¹²³⁴,Orlando Gabriele¹²⁴,Moreau Yves³⁵,Vranken Wim F¹²^ORCID

Affiliation:

1. Interuniversity Institute of Bioinformatics in Brussels, ULB-VUB, Brussels, Belgium

2. Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium

3. ESAT-STADIUS, KU Leuven, Leuven, Belgium

4. Machine Learning Group, Université Libre De Bruxelles, Brussels, Belgium

5. Imec, Leuven, Belgium

Funder

Innovation by Science and Technology in Flanders

Research Foundation Flanders

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/article-pdf/34/18/3118/25731572/bty309.pdf

Reference45 articles.

1. Discrete cosine transform;Ahmed;IEEE Trans. Computers,1974

2. Remote homology detection: a motif based approach;Ben-Hur;Bioinformatics,2003

3. Sequence context-specific profiles for homology searching;Biegert;PNAS,2009

4. BLAST: a more efficient report with usability improvements;Boratyn;Nucleic Acids Res,2013

5. Random forests;Breiman;Mach. Learn,2001

Cited by 12 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Protein domain embeddings for fast and accurate similarity search;2023-11-27

2. Evolution stage identification of haze pollution episodes in beijing using constrained dynamic time warping and multiway principal component analysis;Environmental Modelling & Software;2023-10

3. Improved global protein homolog detection with major gains in function identification;Proceedings of the National Academy of Sciences;2023-02-24

4. Protein Language Model Performs Efficient Homology Detection;2022-03-13

5. Biological Sequence Classification: A Review on Data and General Methods;Research;2022-01