VCPA: genomic variant calling pipeline and data management tool for Alzheimer’s Disease Sequencing Project-Reference-Cited by-同舟云学术

VCPA: genomic variant calling pipeline and data management tool for Alzheimer’s Disease Sequencing Project

Published:2018-10-23 Issue:10 Volume:35 Page:1768-1770
ISSN:1367-4803
Container-title:Bioinformatics
language:en
Short-container-title:

Author:

Leung Yuk Yee¹,Valladares Otto¹,Chou Yi-Fan¹,Lin Han-Jen¹,Kuzma Amanda B¹,Cantwell Laura¹,Qu Liming¹,Gangadharan Prabhakaran¹,Salerno William J²,Schellenberg Gerard D¹,Wang Li-San¹

Affiliation:

1. Department of Pathology and Laboratory Medicine, Perelman School of Medicine at the University of Pennsylvania, Penn Neurodegeneration Genomics Center, Philadelphia, PA, USA

2. Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA

Funder

National Institute on Aging

Publisher

Oxford University Press (OUP)

Subject

Computational Mathematics,Computational Theory and Mathematics,Computer Science Applications,Molecular Biology,Biochemistry,Statistics and Probability

Link

http://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/bty894/28388605/bty894.pdf

Reference10 articles.

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2. xAtlas: scalable small variant calling across heterogeneous next-generation sequencing experiments.;Farek;bioRxiv,2018

3. SAMBLASTER: fast duplicate marking and structural variant read extraction;Faust;Bioinformatics,2014

4. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM;Li;arXiv preprint,2013

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