Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles
Author:
Affiliation:
1. Scuola Internazionale Superiore di Studi Avanzati, Via Bonomea 265, Trieste 34136, Italy
2. Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, MO 63110, USA
Abstract
Publisher
Oxford University Press (OUP)
Subject
Genetics
Link
http://academic.oup.com/nar/article-pdf/49/14/e84/39802631/gkab459.pdf
Reference74 articles.
1. RNA dynamics: it is about time;Al-Hashimi;Curr. Opin. Struct. Biol.,2008
2. Hierarchy of RNA functional dynamics;Mustoe;Annu. Rev. Biochem.,2014
3. Biomolecular simulation: a computational microscope for molecular biology;Dror;Annu. Rev. Biophys.,2012
4. RNA structural dynamics as captured by molecular simulations: a comprehensive overview;Šponer;Chem. Rev.,2018
5. On the use of experimental observations to bias simulated ensembles;Pitera;J. Chem. Theory Comput.,2012
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