miRNATissueAtlas2: an update to the human miRNA tissue atlas-Reference-Cited by-同舟云学术

miRNATissueAtlas2: an update to the human miRNA tissue atlas

Published:2021-09-27 Issue:D1 Volume:50 Page:D211-D221
ISSN:0305-1048
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Keller Andreas¹²^ORCID,Gröger Laura³,Tschernig Thomas⁴,Solomon Jeffrey¹,Laham Omar¹,Schaum Nicholas²,Wagner Viktoria¹,Kern Fabian¹^ORCID,Schmartz Georges Pierre¹,Li Yongping¹,Borcherding Adam⁵,Meier Carola⁴,Wyss-Coray Tony²,Meese Eckart⁶,Fehlmann Tobias¹^ORCID,Ludwig Nicole³

Affiliation:

1. Clinical Bioinformatics, Center for Bioinformatics, Saarland University, 66123 Saarbrücken, Germany

2. Department of Neurology and Neurobiology, Stanford University, CA 94305, USA

3. Center for Human and Molecular Biology, Junior Research Group Human Genetics, Saarland University, 66421 Homburg, Germany

4. Institute for Anatomy, Saarland University, 66421 Homburg, Germany

5. Complete Genomics Inc, San Jose, CA 95134, USA

6. Department of Human Genetics, Saarland University, 66421 Homburg, Germany

Abstract

Abstract Small non-coding RNAs (sncRNAs) are pervasive regulators of physiological and pathological processes. We previously developed the human miRNA Tissue Atlas, detailing the expression of miRNAs across organs in the human body. Here, we present an updated resource containing sequencing data of 188 tissue samples comprising 21 organ types retrieved from six humans. Sampling the organs from the same bodies minimizes intra-individual variability and facilitates the making of a precise high-resolution body map of the non-coding transcriptome. The data allow shedding light on the organ- and organ system-specificity of piwi-interacting RNAs (piRNAs), transfer RNAs (tRNAs), microRNAs (miRNAs) and other non-coding RNAs. As use case of our resource, we describe the identification of highly specific ncRNAs in different organs. The update also contains 58 samples from six tissues of the Tabula Muris collection, allowing to check if the tissue specificity is evolutionary conserved between Homo sapiens and Mus musculus. The updated resource of 87 252 non-coding RNAs from nine non-coding RNA classes for all organs and organ systems is available online without any restrictions (https://www.ccb.uni-saarland.de/tissueatlas2).

Funder

Saarland University

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

https://academic.oup.com/nar/article-pdf/50/D1/D211/42057960/gkab808.pdf

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