Beyond the SNP Threshold: Identifying Outbreak Clusters Using Inferred Transmissions

Author:

Stimson James1,Gardy Jennifer23,Mathema Barun4,Crudu Valeriu5,Cohen Ted6,Colijn Caroline17

Affiliation:

1. Department of Mathematics, Imperial College London, London, UK

2. British Columbia Centre for Disease Control, Communicable Disease Prevention and Control Services, Vancouver, Canada

3. School of Population and Public Health, University of British Columbia, Vancouver, Canada

4. Department of Epidemiology, Columbia University Mailman School of Public Health, New York, USA

5. Phthisiopneumology Institute, Chisinau, Republic of Moldova

6. Yale University School of Public Health, New Haven

7. Department of Mathematics, Simon Fraser University, Vancouver, Canada

Funder

The Engineering and Physical Sciences Research Council

EPSRC

National Institute of General Medical Sciences

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Genetics,Molecular Biology,Ecology, Evolution, Behavior and Systematics

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