The Genomic Landscapes of Desert Birds Form over Multiple Time Scales

Author:

Provost Kaiya12345ORCID,Shue Stephanie Yun45,Forcellati Meghan46,Smith Brian Tilston1

Affiliation:

1. Department of Ornithology, American Museum of Natural History , New York, NY , USA

2. Richard Gilder Graduate School, American Museum of Natural History , New York, NY , USA

3. Department of Evolution, Ecology and Organismal Biology, The Ohio State University , Columbus, OH , USA

4. Bergen County Academies , Hackensack, NJ , USA

5. Biological Sciences, University of California Berkeley , Berkeley, CA , USA

6. Ecology, Evolution, and Environmental Biology, Columbia University , New York, NY , USA

Abstract

AbstractSpatial models show that genetic differentiation between populations can be explained by factors ranging from geographic distance to environmental resistance across the landscape. However, genomes exhibit a landscape of differentiation, indicating that multiple processes may mediate divergence in different portions of the genome. We tested this idea by comparing alternative geographic predctors of differentiation in ten bird species that co-occur in Sonoran and Chihuahuan Deserts of North America. Using population-level genomic data, we described the genomic landscapes across species and modeled conditions that represented historical and contemporary mechanisms. The characteristics of genomic landscapes differed across species, influenced by varying levels of population structuring and admixture between deserts, and the best-fit models contrasted between the whole genome and partitions along the genome. Both historical and contemporary mechanisms were important in explaining genetic distance, but particularly past and current environments, suggesting that genomic evolution was modulated by climate and habitat There were also different best-ftit models across genomic partitions of the data, indicating that these regions capture different evolutionary histories. These results show that the genomic landscape of differentiation can be associated with alternative geographic factors operating on different portions of the genome, which reflect how heterogeneous patterns of genetic differentiation can evolve across species and genomes.

Funder

US NSF

Publisher

Oxford University Press (OUP)

Subject

Genetics,Molecular Biology,Ecology, Evolution, Behavior and Systematics

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