BlackOPs: increasing confidence in variant detection through mappability filtering-Reference-Cited by-同舟云学术

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BlackOPs: increasing confidence in variant detection through mappability filtering

Published:2013-08-08 Issue:19 Volume:41 Page:e178-e178
ISSN:1362-4962
Container-title:Nucleic Acids Research
language:en
Short-container-title:

Author:

Cabanski Christopher R.,Wilkerson Matthew D.,Soloway Matthew,Parker Joel S.,Liu Jinze,Prins Jan F.,Marron J. S.,Perou Charles M.,Hayes D. Neil

Publisher

Oxford University Press (OUP)

Subject

Genetics

Link

http://academic.oup.com/nar/article-pdf/41/19/e178/16951944/gkt692.pdf

Reference37 articles.

1. From RNA-seq reads to differential expression results;Oshlack;Genome Biol.,2010

2. Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM);Grant;Bioinformatics,2011

3. Accurate identification of A-to-I RNA editing in human by transcriptome sequencing;Bahn;Genome Res.,2012

4. Differential pathogenesis of lung adenocarcinoma subtypes involving sequence mutations, copy number, chromosomal instability, and methylation;Wilkerson;PLoS One,2012

5. Activating mutations in the epidermal growth factor receptor underlying responsiveness of non-small-cell lung cancer to gefitinib;Lynch;N. Engl. J. Med.,2004

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1. UNMASC: tumor-only variant calling with unmatched normal controls;NAR Cancer;2021-10-04

2. Recurrent miscalling of missense variation from short-read genome sequence data;BMC Genomics;2019-07

3. Analysis of error profiles in deep next-generation sequencing data;Genome Biology;2019-03-14

4. A map of constrained coding regions in the human genome;Nature Genetics;2018-12-10

5. A Computational Protocol for Detecting Somatic Mutations by Integrating DNA and RNA Sequencing;Methods in Molecular Biology;2018-10-31

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