The International Mouse Phenotyping Consortium: comprehensive knockout phenotyping underpinning the study of human disease

Author:

Groza Tudor1ORCID,Gomez Federico Lopez1,Mashhadi Hamed Haseli1,Muñoz-Fuentes Violeta1,Gunes Osman1,Wilson Robert1,Cacheiro Pilar2,Frost Anthony3,Keskivali-Bond Piia3,Vardal Bora3,McCoy Aaron3,Cheng Tsz Kwan3,Santos Luis4,Wells Sara3,Smedley Damian2ORCID,Mallon Ann-Marie4,Parkinson Helen1

Affiliation:

1. European Bioinformatics Institute, European Molecular Biology Laboratory , Welcome Genome Campus, Hinxton CB10 1SD, UK

2. William Harvey Research Institute, Queen Mary University of London , London EC1M 6BQ, UK

3. Mary Lyon Centre at MRC Harwell , Harwell Campus OX11 7UE, UK

4. Research Data Team, The Turing Institute , 96 Euston Rd, London NW1 2DB, UK

Abstract

Abstract The International Mouse Phenotyping Consortium (IMPC; https://www.mousephenotype.org/) web portal makes available curated, integrated and analysed knockout mouse phenotyping data generated by the IMPC project consisting of 85M data points and over 95,000 statistically significant phenotype hits mapped to human diseases. The IMPC portal delivers a substantial reference dataset that supports the enrichment of various domain-specific projects and databases, as well as the wider research and clinical community, where the IMPC genotype–phenotype knowledge contributes to the molecular diagnosis of patients affected by rare disorders. Data from 9,000 mouse lines and 750 000 images provides vital resources enabling the interpretation of the ignorome, and advancing our knowledge on mammalian gene function and the mechanisms underlying phenotypes associated with human diseases. The resource is widely integrated and the lines have been used in over 4,600 publications indicating the value of the data and the materials.

Funder

National Institutes of Health

EMBL-EBI Core Funding

Publisher

Oxford University Press (OUP)

Subject

Genetics

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