Virome release of an invasive exotic plant species in southern France

Author:

Moubset Oumaima12,Filloux Denis12,Fontes Hugo34ORCID,Julian Charlotte12,Fernandez Emmanuel12,Galzi Serge12,Blondin Laurence12,Chehida Sélim Ben5,Lett Jean-Michel5,Mesléard François34,Kraberger Simona6,Custer Joy M6,Salywon Andrew7,Makings Elizabeth8,Marais Armelle9,Chiroleu Frédéric5,Lefeuvre Pierre5ORCID,Martin Darren P10ORCID,Candresse Thierry9ORCID,Varsani Arvind611ORCID,Ravigné Virginie12,Roumagnac Philippe12ORCID

Affiliation:

1. UMR PHIM, CIRAD , Baillarguet TA A-54/K, Montpellier 34090, France

2. PHIM Plant Health Institute, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD , Baillarguet TA A-54/K, Montpellier 34090, France

3. Tour du Valat, Institut de recherche pour la conservation des zones humides méditerranéennes , Le Sambuc, Arles 13200, France

4. Institut Méditerranéen de Biodiversité et Ecologie, UMR CNRS-IRD, Avignon Université, Aix-Marseille Université, IUT d’Avignon , Avignon 84911, France

5. UMR PVBMT, CIRAD , Saint-Pierre, La Réunion F-97410, France

6. The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University , Tempe, AZ 85287, USA

7. Department of Research, Conservation and Collections, Desert Botanical Garden , Phoenix, AZ 85008, USA

8. Vascular Plant Herbarium, School of Life Sciences, Arizona State University , 734 West Alameda Drive, Tempe Tempe, AZ 85282, USA

9. UMR BFP, University Bordeaux, INRAE , Villenave d’Ornon 33140, France

10. Division of Computational Biology, Department of Integrative Biomedical Sciences, Institute of infectious Diseases and Molecular Medicine, University of Cape Town , Anzio Rd, Cape Town 7925, South Africa

11. Structural Biology Research Unit, Department of Integrative Biomedical Sciences, University of Cape Town , Observatory, Cape Town 7700, South Africa

Abstract

Abstract The increase in human-mediated introduction of plant species to new regions has resulted in a rise of invasive exotic plant species (IEPS) that has had significant effects on biodiversity and ecosystem processes. One commonly accepted mechanism of invasions is that proposed by the enemy release hypothesis (ERH), which states that IEPS free from their native herbivores and natural enemies in new environments can outcompete indigenous species and become invasive. We here propose the virome release hypothesis (VRH) as a virus-centered variant of the conventional ERH that is only focused on enemies. The VRH predicts that vertically transmitted plant-associated viruses (PAV, encompassing phytoviruses and mycoviruses) should be co-introduced during the dissemination of the IEPS, while horizontally transmitted PAV of IEPS should be left behind or should not be locally transmitted in the introduced area due to a maladaptation of local vectors. To document the VRH, virome richness and composition as well as PAV prevalence, co-infection, host range, and transmission modes were compared between indigenous plant species and an invasive grass, cane bluestem (Bothriochloa barbinodis), in both its introduced range (southern France) and one area of its native range (Sonoran Desert, Arizona, USA). Contrary to the VRH, we show that invasive populations of B. barbinodis in France were not associated with a lower PAV prevalence or richness than native populations of B. barbinodis from the USA. However, comparison of virome compositions and network analyses further revealed more diverse and complex plant–virus interactions in the French ecosystem, with a significant richness of mycoviruses. Setting mycoviruses apart, only one putatively vertically transmitted phytovirus (belonging to the Amalgaviridae family) and one putatively horizontally transmitted phytovirus (belonging to the Geminiviridae family) were identified from B. barbinodis plants in the introduced area. Collectively, these characteristics of the B. barbinodis-associated PAV community in southern France suggest that a virome release phase may have immediately followed the introduction of B. barbinodis to France in the 1960s or 1970s, and that, since then, the invasive populations of this IEPS have already transitioned out of this virome release phase, and have started interacting with several local mycoviruses and a few local plant viruses.

Funder

European Regional Development Fund

Agence Nationale de la Recherche

Publisher

Oxford University Press (OUP)

Reference81 articles.

1. Package ‘Networkd3,’ D3 JavaScript Network Graphs from R;Allaire,2017

2. Cross-Kingdom Interactions between Plant and Fungal Viruses;Andika;Annual Review of Virology,2023

3. Bilan de l’industrie lainiere en France Etudes Et Conjonctures - Union française/Economie Française 3ème Année N°6-8;Angoulvent,1948

4. Multidimensional Metrics for Estimating Phage Abundance, Distribution, Gene Density, and Sequence Coverage in Metagenomes;Aziz;Frontiers in Microbiology,2015

5. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-cell Sequencing;Bankevich;Journal of Computational Biology,2012

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