MN1 C-terminal truncation syndrome is a novel neurodevelopmental and craniofacial disorder with partial rhombencephalosynapsis

Author:

Mak Christopher C Y1,Doherty Dan23,Lin Angela E4,Vegas Nancy56,Cho Megan T7,Viot Géraldine8,Dimartino Clémantine56,Weisfeld-Adams James D9,Lessel Davor10ORCID,Joss Shelagh11,Li Chumei12,Gonzaga-Jauregui Claudia13,Zarate Yuri A14,Ehmke Nadja15,Horn Denise15,Troyer Caitlin16,Kant Sarina G17,Lee Youngha18,Ishak Gisele E319,Leung Gordon1,Barone Pritchard Amanda20,Yang Sandra7,Bend Eric G2122,Filippini Francesca56ORCID,Roadhouse Chelsea12,Lebrun Nicolas23,Mehaffey Michele G2,Martin Pierre-Marie2425,Apple Benjamin9,Millan Francisca7,Puk Oliver26,Hoffer Mariette J V17,Henderson Lindsay B7,McGowan Ruth11,Wentzensen Ingrid M7,Pei Steven1,Zahir Farah R27,Yu Mullin1,Gibson William T27,Seman Ann28,Steeves Marcie4,Murrell Jill R29,Luettgen Sabine10,Francisco Elizabeth30,Strom Tim M3132,Amlie-Wolf Louise33,Kaindl Angela M3435,Wilson William G16,Halbach Sara36,Basel-Salmon Lina37383940,Lev-El Noa37,Denecke Jonas41,Vissers Lisenka E L M42,Radtke Kelly43,Chelly Jamel444546,Zackai Elaine2047,Friedman Jan M27,Bamshad Michael J24849,Nickerson Deborah A4849,Reid Russell R50,Devriendt Koenraad51,Chae Jong-Hee52,Stolerman Elliot21,McDougall Carey20,Powis Zöe43,Bienvenu Thierry2353,Tan Tiong Y54ORCID,Orenstein Naama3839,Dobyns William B2355,Shieh Joseph T2425,Choi Murim1852,Waggoner Darrel36,Gripp Karen W33,Parker Michael J56,Stoler Joan28,Lyonnet Stanislas5657,Cormier-Daire Valérie65758,Viskochil David59,Hoffman Trevor L60,Amiel Jeanne5657,Chung Brian H Y1,Gordon Christopher T56ORCID,

Affiliation:

1. Department of Paediatrics and Adolescent Medicine, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China

2. Department of Pediatrics, University of Washington, Seattle, WA, USA

3. Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA, USA

4. Medical Genetics, MassGeneral Hospital for Children, Boston, MA, USA

5. Laboratory of Embryology and Genetics of Human Malformation, Institut National de la Santé et de la Recherche Médicale (INSERM) UMR 1163, Institut Imagine, Paris, France

6. Paris Descartes-Sorbonne Paris Cité University, Institut Imagine, Paris, France

7. GeneDx, Gaithersburg, MD, USA

8. Gynécologie Obstétrique, Hôpital Cochin, Hôpitaux Universitaires Paris Centre (HUPC), Assistance Publique Hôpitaux de Paris (AP-HP), Paris, France

9. Section of Clinical Genetics and Metabolism, Department of Pediatrics, University of Colorado-Denver School of Medicine, Aurora, CO, USA

10. Institute of Human Genetics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany

11. West of Scotland Regional Genetics Service, Queen Elizabeth University Hospital, Glasgow, UK

12. McMaster University Medical Center, Hamilton, Ontario, Canada

13. Regeneron Genetics Center, Regeneron Pharmaceuticals Inc, Tarrytown, NY, USA

14. Section of Genetics and Metabolism, University of Arkansas for Medical Sciences, Arkansas Children's Hospital, Little Rock, AR, USA

15. Institute for Medical Genetics and Human Genetics, Charité – Universitätsmedizin Berlin, Berlin, Germany

16. Pediatrics and Medical Genetics, University of Virginia Health System, Charlottesville, VA, USA

17. Department of Clinical Genetics, Leiden University Medical Center, RC Leiden, The Netherlands

18. Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Republic of Korea

19. Department of Radiology, University of Washington, Seattle, WA, USA

20. Division of Human Genetics, Children's Hospital of Philadelphia, Philadelphia, PA, USA

21. Greenwood Genetic Center, Greenwood, SC, USA

22. PreventionGenetics, Marshfield, WI, USA

23. Institut Cochin, INSERM U1016, CNRS UMR, Paris Descartes University, Paris, France

24. Institute for Human Genetics, University of California San Francisco, San Francisco, CA, USA

25. Division of Medical Genetics, Department of Pediatrics, University of California San Francisco, San Francisco, CA, USA

26. Praxis für Humangenetik Tübingen, Tübingen, Germany

27. Department of Medical Genetics, University of British Columbia, Vancouver, BC, Canada

28. Division of Genetics and Genomics, Boston Children’s Hospital, Boston, MA, USA

29. Division of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, PA, USA

30. eviCore healthcare, Bluffton, SC, USA

31. Institute of Human Genetics, Helmholtz Zentrum München, Neuherberg, Germany

32. Institute of Human Genetics, Technische Universität München, Munich, Germany

33. Division of Medical Genetics, A I duPont Hospital for Children/Nemours, Wilmington, DE, USA

34. Charité – Universitätsmedizin Berlin, Institute of Neuroanatomy and Cell Biology, Department of Pediatric Neurology and Center for Chronically Sick Children, Berlin, Germany

35. Berlin Institute of Health (BIH), Berlin, Germany

36. Department of Human Genetics, University of Chicago, Chicago, IL, USA

37. Raphael Recanati Genetic Institute, Rabin Medical Center–Beilinson Hospital, Petach Tikva, Israel

38. Pediatric Genetics Clinic, Schneider Children’s Medical Center of Israel, Petach Tikva, Israel

39. Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, Israel

40. Felsenstein Medical Research Center, Petach Tikva, Israel

41. Department of Pediatrics, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany

42. Department of Human Genetics, Donders Centre for Neuroscience, Radboud University Medical Center, HB Nijmegen, The Netherlands

43. Clinical Genomics Department, Ambry Genetics, Aliso Viejo, CA, USA

44. Laboratoire de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Nouvel Hôpital Civil, Strasbourg, France

45. Fédération de Médecine Translationnelle de Strasbourg, Université de Strasbourg, 67000 Strasbourg, France

46. Institut de Génétique et de Biologie Moléculaire et Cellulaire, INSERM U964, CNRS UMR7104, Université de Strasbourg, 67404 Illkirch, France

47. Department of Pediatrics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA

48. Department of Genome Sciences, University of Washington, Seattle, WA, USA

49. University of Washington Center for Mendelian Genomics, Seattle, WA, USA

50. Department of Surgery, Section of Plastic Surgery, University of Chicago, Chicago, IL, USA

51. Department of Human Genetics, Katholieke Universiteit Leuven, 3000 Leuven, Belgium

52. Department of Pediatrics, Seoul National University College of Medicine, Seoul, Republic of Korea

53. Laboratoire de Génétique et Biologie Moléculaires, Hôpital Cochin, HUPC, AP-HP, 75014 Paris, France

54. Victorian Clinical Genetics Services, Murdoch Children's Research Institute, Department of Paediatrics, University of Melbourne, Melbourne, 3052, Australia

55. Department of Neurology, University of Washington, Seattle, WA, USA

56. Sheffield Clinical Genetics Service, Sheffield Children's Hospital, Sheffield S10 2TH, UK

57. Département de Génétique, Hôpital Necker-Enfants Malades, AP-HP, Paris, France

58. Laboratory of Molecular and Physiopathological Bases of Osteochondrodysplasia, INSERM UMR 1163, Institut Imagine, 75015 Paris, France

59. Division of Medical Genetics, University of Utah, Salt Lake City, UT, USA

60. Southern California Kaiser Permanente Medical Group, Anaheim, CA, USA

Abstract

Abstract MN1 encodes a transcriptional co-regulator without homology to other proteins, previously implicated in acute myeloid leukaemia and development of the palate. Large deletions encompassing MN1 have been reported in individuals with variable neurodevelopmental anomalies and non-specific facial features. We identified a cluster of de novo truncating mutations in MN1 in a cohort of 23 individuals with strikingly similar dysmorphic facial features, especially midface hypoplasia, and intellectual disability with severe expressive language delay. Imaging revealed an atypical form of rhombencephalosynapsis, a distinctive brain malformation characterized by partial or complete loss of the cerebellar vermis with fusion of the cerebellar hemispheres, in 8/10 individuals. Rhombencephalosynapsis has no previously known definitive genetic or environmental causes. Other frequent features included perisylvian polymicrogyria, abnormal posterior clinoid processes and persistent trigeminal artery. MN1 is encoded by only two exons. All mutations, including the recurrent variant p.Arg1295* observed in 8/21 probands, fall in the terminal exon or the extreme 3′ region of exon 1, and are therefore predicted to result in escape from nonsense-mediated mRNA decay. This was confirmed in fibroblasts from three individuals. We propose that the condition described here, MN1 C-terminal truncation (MCTT) syndrome, is not due to MN1 haploinsufficiency but rather is the result of dominantly acting C-terminally truncated MN1 protein. Our data show that MN1 plays a critical role in human craniofacial and brain development, and opens the door to understanding the biological mechanisms underlying rhombencephalosynapsis.

Funder

Université Sorbonne Paris-Cité Pôle de recherche et d'enseignement supérieur

Agence Nationale de la Recherche

MSDAvenir

NIH Eunice Kennedy Shriver National Institute of Child Health and Human Development

NIH National Institute of Neurological Diseases and Stroke

NIH National Human Genome Research Institute

Health Innovation Challenge Fund

NIH

Publisher

Oxford University Press (OUP)

Subject

Neurology (clinical)

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