Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources

Author:

Wong Edith D1,Miyasato Stuart R1,Aleksander Suzi1,Karra Kalpana1,Nash Robert S1,Skrzypek Marek S1,Weng Shuai1,Engel Stacia R1,Cherry J Michael1

Affiliation:

1. Department of Genetics, Stanford University , Stanford, CA 94305 , USA

Abstract

Abstract As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since 1993. As technologies and research evolve, so does SGD: from updates in software architecture, to curation of novel data types, to incorporation of data from, and collaboration with, other knowledgebases. We are continuing to make steps toward providing the community with an S. cerevisiae pan-genome. Here, we describe software upgrades, a new nomenclature system for genes not found in the reference strain, and additions to gene pages. With these improvements, we aim to remain a leading resource for students, researchers, and the broader scientific community.

Funder

National Human Genome Research Institute

National Institutes of Health

Publisher

Oxford University Press (OUP)

Subject

Genetics

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