Network-based methods for gene function prediction

Author:

Chen Qingfeng1,Li Yongjie2,Tan Kai2,Qiao Yvlu2,Pan Shirui3,Jiang Taijiao4,Chen Yi-Ping Phoebe5

Affiliation:

1. University of Technology Sydney, China and Hundred-Talent Program

2. School of Computer and Electronic Information at Guangxi University

3. Computer science from the University of Technology Sydney

4. Suzhou Institute of System Medicine, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences & Peking Union Medical College

5. Department of Computer Science and Computer Engineering, La Trobe University, Melbourne, Australia

Abstract

Abstract The rapid development of high-throughput technology has generated a large number of biological networks. Network-based methods are able to provide rich information for inferring gene function. This is composed of analyzing the topological characteristics of genes in related networks, integrating biological information, and considering data from different data sources. To promote network biology and related biotechnology research, this article provides a survey for the state of the art of advanced methods of network-based gene function prediction and discusses the potential challenges.

Funder

National Natural Science Foundation of China

Natural Science Foundation of Guangxi

Key Research and Development Plan of Guangxi

Publisher

Oxford University Press (OUP)

Subject

Genetics,Molecular Biology,Biochemistry,General Medicine

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