McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots
Author:
Affiliation:
1. Institut de Physique Théorique, CEA Saclay, CNRS URA 2306, 91191 Gif-sur-Yvette, France and 2SISSA, Scuola Internazionale Superiore di Studi Avanzati and CNR-IOM Democritos, Via Bonomea 265, I-34136 Trieste, Italy
Publisher
Oxford University Press (OUP)
Subject
Genetics
Link
http://academic.oup.com/nar/article-pdf/41/3/1895/25340772/gks1204.pdf
Reference24 articles.
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2. Algorithms for loop matchings;Nussinov;SIAM J. Appl. Math.,1978
3. UNAFold: software for nucleic acid folding and hybridization;Markham,2008
4. The equilibrium partition function and base pair binding probabilities for RNA secondary structure;McCaskill;Biopolymers,1990
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