Assessing immune phenotypes using simple proxy measures: promise and limitations

Author:

Downie Alexander E1ORCID,Barre Ramya S12ORCID,Robinson Annie1,Yang Jennie1,Chen Ying-Han345ORCID,Lin Jian-Da67ORCID,Oyesola Oyebola8ORCID,Yeung Frank3,Cadwell Ken3491011ORCID,Loke P’ng348ORCID,Graham Andrea L112ORCID

Affiliation:

1. Department of Ecology and Evolutionary Biology, Princeton University , Princeton, NJ , USA

2. Department of Microbiology, Immunology, and Molecular Genetics, University of Texas Health Sciences Center at San Antonio ; San Antonio, TX , USA

3. Kimmel Center for Biology and Medicine at the Skirball Institute, New York University Grossman School of Medicine ; New York, NY , USA

4. Department of Microbiology, New York University Grossman School of Medicine ; New York, NY , USA

5. Institute of Biomedical Sciences, Academia Sinica , Taipei City , Taiwan

6. Department of Biochemical Science and Technology, College of Life Science, National Taiwan University , Taipei City , Taiwan

7. Center for Computational and Systems Biology, National Taiwan University , Taipei City , Taiwan

8. Laboratory of Parasitic Diseases, National Institute for Allergy and Infectious Diseases, National Institutes of Health ; Bethesda, MD , USA

9. Division of Gastroenterology and Hepatology, Department of Medicine, University of Pennsylvania Perelman School of Medicine , Philadelphia, PA , USA

10. Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania Perelman School of Medicine , Philadelphia, PA , USA

11. Department of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine , Philadelphia, PA , USA

12. Santa Fe Institute ; Santa Fe, NM , USA

Abstract

Abstract The study of immune phenotypes in wild animals is beset by numerous methodological challenges, with assessment of detailed aspects of phenotype difficult to impossible. This constrains the ability of disease ecologists and ecoimmunologists to describe immune variation and evaluate hypotheses explaining said variation. The development of simple approaches that allow characterization of immune variation across many populations and species would be a significant advance. Here we explore whether serum protein concentrations and coarse-grained white blood cell profiles, immune quantities that can easily be assayed in many species, can predict, and therefore serve as proxies for, lymphocyte composition properties. We do this in rewilded laboratory mice, which combine the benefits of immune phenotyping of lab mice with the natural context and immune variation found in the wild. We find that easily assayed immune quantities are largely ineffective as predictors of lymphocyte composition, either on their own or with other covariates. Immunoglobulin G (IgG) concentration and neutrophil-lymphocyte ratio show the most promise as indicators of other immune traits, but their explanatory power is limited. Our results prescribe caution in inferring immune phenotypes beyond what is directly measured, but they do also highlight some potential paths forward for the development of proxy measures employable by ecoimmunologists.

Funder

National Science Foundation

National Institute of Allergy and Infectious Diseases

National Institutes of Health

New Jersey Alliance for Clinical and Translational Science

New Jersey Health Foundation Inc

Clinical and Translational Science

National Center for Advancing Translational Science

Young Scholar Fellowship-Einstein

Yushan Scholar Program

Featured Areas Research Center Program

Center for Advanced Computing and Imaging in Biomedicine

National Science and Technology Council and the Ministry of Education

Publisher

Oxford University Press (OUP)

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